Variant report

Variant	rs12096017
Chromosome Location	chr1:78974909-78974910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12058120	0.98[AFR][1000 genomes]
rs12082394	0.85[AFR][1000 genomes]
rs1322934	0.85[AFR][1000 genomes]
rs1575396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1575397	0.96[EUR][1000 genomes]
rs28832602	0.98[AFR][1000 genomes]
rs33994937	0.82[AFR][1000 genomes]
rs34490913	0.85[AFR][1000 genomes]
rs3766346	0.98[AFR][1000 genomes]
rs4417016	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs538976	0.88[EUR][1000 genomes]
rs58710307	0.88[EUR][1000 genomes]
rs59066408	0.96[EUR][1000 genomes]
rs59141469	0.96[EUR][1000 genomes]
rs61769127	0.96[EUR][1000 genomes]
rs61769128	0.96[EUR][1000 genomes]
rs61769135	0.92[EUR][1000 genomes]
rs61769136	0.96[EUR][1000 genomes]
rs61769139	0.88[EUR][1000 genomes]
rs6690555	0.96[EUR][1000 genomes]
rs6700362	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv871260	chr1:78957859-78976570	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78963400-78975800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:78969800-78976800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:78973400-78976200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:78973600-78975800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:78974000-78976000	Strong transcription	NHDF-Ad	bronchial
6	chr1:78974200-78976800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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