Variant report

Variant	rs6690555
Chromosome Location	chr1:78977474-78977475
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12096017	0.96[EUR][1000 genomes]
rs1322933	0.92[AFR][1000 genomes]
rs1322935	0.92[AFR][1000 genomes]
rs1575396	0.96[EUR][1000 genomes]
rs1575397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4417016	0.96[EUR][1000 genomes]
rs538976	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58710307	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59066408	1.00[EUR][1000 genomes]
rs59141469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61769118	0.92[AFR][1000 genomes]
rs61769127	1.00[EUR][1000 genomes]
rs61769128	1.00[EUR][1000 genomes]
rs61769130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61769135	0.96[EUR][1000 genomes]
rs61769136	1.00[EUR][1000 genomes]
rs61769139	0.92[EUR][1000 genomes]
rs688775	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78976000-78977600	ZNF genes & repeats	NHDF-Ad	bronchial
2	chr1:78976200-78977600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:78976400-78977600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:78976600-78977600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:78976600-78977800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:78977200-78977600	Strong transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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