Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12096017	0.88[EUR][1000 genomes]
rs1322933	1.00[ASW][hapmap];0.94[LWK][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes]
rs1322934	0.82[LWK][hapmap]
rs1322935	1.00[ASW][hapmap];0.94[LWK][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes]
rs1575396	0.88[EUR][1000 genomes]
rs1575397	0.92[GIH][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4417016	0.88[EUR][1000 genomes]
rs540757	1.00[MEX][hapmap]
rs58710307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59066408	0.92[EUR][1000 genomes]
rs59141469	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61769118	0.91[AFR][1000 genomes]
rs61769127	0.92[EUR][1000 genomes]
rs61769128	0.92[EUR][1000 genomes]
rs61769130	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61769135	0.88[EUR][1000 genomes]
rs61769136	0.92[EUR][1000 genomes]
rs61769139	1.00[EUR][1000 genomes]
rs6690555	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs688775	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:78977600-78987600	Weak transcription	NHDF-Ad	bronchial
2	chr1:78977600-78993200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr1:78977800-78987800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr1:78984800-78986800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr1:78985000-78987000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:78985000-78987000	Enhancers	HSMM	muscle
7	chr1:78985200-78986800	Enhancers	HMEC	breast
8	chr1:78985200-78986800	Enhancers	Osteobl	bone
9	chr1:78985400-78986800	Enhancers	HSMMtube	muscle
10	chr1:78985600-78986800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:78986600-78986800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:78986600-78987600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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