Variant report

Variant	rs12098632
Chromosome Location	chr10:52297724-52297725
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52289138..52291213-chr10:52296905..52299166,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3011732	1.00[AMR][1000 genomes]
rs59122941	1.00[AMR][1000 genomes]
rs7085876	1.00[AMR][1000 genomes]
rs7094446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7097621	1.00[AMR][1000 genomes]
rs7909624	1.00[AMR][1000 genomes]
rs7916118	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52271600-52300600	Weak transcription	Aorta	Aorta
2	chr10:52272600-52302800	Weak transcription	Fetal Stomach	stomach
3	chr10:52273600-52298400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:52273600-52299800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:52279400-52298200	Weak transcription	Fetal Intestine Small	intestine
6	chr10:52279600-52298400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:52279600-52298400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr10:52279600-52298800	Weak transcription	Lung	lung
9	chr10:52279800-52298600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:52282800-52301200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:52283000-52300400	Weak transcription	Psoas Muscle	Psoas
13	chr10:52286400-52304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:52287400-52298200	Weak transcription	Left Ventricle	heart
15	chr10:52287800-52302800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:52288200-52298600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:52288600-52300000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:52289400-52300000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr10:52291600-52298600	Weak transcription	Pancreas	Pancrea
20	chr10:52291800-52298600	Weak transcription	Gastric	stomach
21	chr10:52293600-52298600	Enhancers	K562	blood
22	chr10:52294600-52298600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr10:52295200-52298600	Weak transcription	NHEK	skin
24	chr10:52295600-52298400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr10:52295800-52298200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:52295800-52298600	Enhancers	Brain Hippocampus Middle	brain
27	chr10:52296000-52298400	Weak transcription	Right Atrium	heart
28	chr10:52296600-52298600	Enhancers	Brain Substantia Nigra	brain
29	chr10:52296600-52298800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr10:52296600-52300600	Enhancers	Brain Anterior Caudate	brain
31	chr10:52296800-52298400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr10:52296800-52302800	Weak transcription	Rectal Smooth Muscle	rectum
33	chr10:52296800-52306000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr10:52297000-52298200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr10:52297000-52298200	Weak transcription	NH-A	brain
36	chr10:52297000-52298400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:52297000-52298400	Weak transcription	HUVEC	blood vessel
38	chr10:52297000-52300400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:52297000-52300400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr10:52297000-52302800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr10:52297000-52304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr10:52297000-52304600	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr10:52297200-52298200	Weak transcription	Brain Angular Gyrus	brain
44	chr10:52297200-52298400	Weak transcription	Osteobl	bone
45	chr10:52297200-52298600	Weak transcription	NHDF-Ad	bronchial
46	chr10:52297200-52301400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr10:52297400-52299400	Enhancers	Placenta	Placenta
48	chr10:52297400-52306000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
49	chr10:52297600-52297800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr10:52297600-52297800	Enhancers	Spleen	Spleen

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