Variant report

Variant	rs7085876
Chromosome Location	chr10:52198023-52198024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52193457..52195166-chr10:52196882..52200363,3	K562	blood:
2	chr10:52185055..52188816-chr10:52196257..52198755,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12098632	1.00[AMR][1000 genomes]
rs6481252	0.81[AFR][1000 genomes]
rs7094446	1.00[AMR][1000 genomes]
rs7903503	0.87[AFR][1000 genomes]
rs7905289	0.87[AFR][1000 genomes]
rs7907448	0.87[AFR][1000 genomes]
rs7909624	1.00[AMR][1000 genomes]
rs7914554	0.87[AFR][1000 genomes]
rs7915490	0.83[AFR][1000 genomes]
rs7916118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52178400-52220000	Weak transcription	Pancreas	Pancrea
2	chr10:52178600-52217200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:52178600-52219400	Weak transcription	Left Ventricle	heart
4	chr10:52178800-52202800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr10:52179000-52205800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:52179000-52207600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr10:52179000-52209000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:52180200-52201200	Weak transcription	Fetal Heart	heart
9	chr10:52181600-52219400	Weak transcription	Placenta	Placenta
10	chr10:52181800-52206200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:52182200-52220000	Weak transcription	Fetal Stomach	stomach
12	chr10:52182600-52200600	Weak transcription	Fetal Brain Male	brain
13	chr10:52191400-52200400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:52191600-52207600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:52191600-52211200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:52191800-52205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:52191800-52219600	Weak transcription	Fetal Lung	lung
18	chr10:52192000-52219600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:52192400-52198200	Weak transcription	Right Atrium	heart
20	chr10:52192400-52199400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:52192400-52199600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:52192400-52200800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:52192400-52202600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr10:52192400-52207600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:52192400-52219400	Weak transcription	Liver	Liver
26	chr10:52192400-52219600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:52192400-52219600	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:52192400-52220000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr10:52192400-52229400	Weak transcription	Aorta	Aorta
30	chr10:52192400-52230400	Weak transcription	HSMM	muscle
31	chr10:52193000-52207400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:52193400-52205400	Weak transcription	Primary B cells from cord blood	blood
33	chr10:52193400-52206200	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:52193800-52198200	Weak transcription	K562	blood
35	chr10:52194200-52207600	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:52196200-52198200	Enhancers	Brain Hippocampus Middle	brain
37	chr10:52196200-52198800	Strong transcription	Primary T cells from cord blood	blood
38	chr10:52196400-52198800	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr10:52196800-52199200	Enhancers	Brain Anterior Caudate	brain
40	chr10:52197000-52199200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr10:52197000-52199600	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr10:52197000-52200800	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr10:52197200-52198800	Enhancers	GM12878-XiMat	blood
44	chr10:52197400-52198200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr10:52197600-52198800	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr10:52197600-52207600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:52197800-52198600	Weak transcription	Brain Substantia Nigra	brain
48	chr10:52197800-52199600	Weak transcription	HSMMtube	muscle
49	chr10:52197800-52200000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr10:52197800-52229800	Weak transcription	Gastric	stomach

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