Variant report

Variant	rs7909624
Chromosome Location	chr10:52284970-52284971
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52117604..52119516-chr10:52283791..52286665,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12098632	1.00[AMR][1000 genomes]
rs3011732	1.00[AMR][1000 genomes]
rs59122941	1.00[AMR][1000 genomes]
rs7085876	1.00[AMR][1000 genomes]
rs7094446	1.00[AMR][1000 genomes]
rs7097621	1.00[AMR][1000 genomes]
rs7916118	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv895391	chr10:52260398-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv895392	chr10:52263910-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv467193	chr10:52265265-52289664	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv550855	chr10:52265265-52289664	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
11	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52262200-52287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:52271600-52300600	Weak transcription	Aorta	Aorta
3	chr10:52272600-52302800	Weak transcription	Fetal Stomach	stomach
4	chr10:52272800-52288200	Weak transcription	HSMMtube	muscle
5	chr10:52273200-52285800	Weak transcription	K562	blood
6	chr10:52273200-52287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:52273200-52287400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr10:52273200-52288400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:52273400-52286000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:52273400-52287000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr10:52273400-52287200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:52273600-52286800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:52273600-52287400	Weak transcription	GM12878-XiMat	blood
14	chr10:52273600-52289600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr10:52273600-52298400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:52273600-52299800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:52274000-52287200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:52274800-52288200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr10:52275200-52294200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:52275600-52285000	Weak transcription	Gastric	stomach
21	chr10:52275600-52286800	Weak transcription	Pancreas	Pancrea
22	chr10:52276200-52286200	Weak transcription	Fetal Heart	heart
23	chr10:52279400-52298200	Weak transcription	Fetal Intestine Small	intestine
24	chr10:52279600-52286600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr10:52279600-52286800	Weak transcription	Left Ventricle	heart
26	chr10:52279600-52290000	Weak transcription	Primary B cells from cord blood	blood
27	chr10:52279600-52298400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:52279600-52298400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr10:52279600-52298800	Weak transcription	Lung	lung
30	chr10:52279800-52286400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:52279800-52286800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr10:52279800-52287200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr10:52279800-52298600	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr10:52280200-52328000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr10:52282200-52285200	Enhancers	Brain Hippocampus Middle	brain
36	chr10:52282200-52286200	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr10:52282200-52286400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr10:52282400-52285400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:52282400-52285600	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr10:52282600-52285200	Enhancers	Brain Substantia Nigra	brain
41	chr10:52282600-52285800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:52282800-52291200	Weak transcription	Esophagus	oesophagus
43	chr10:52282800-52301200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr10:52283000-52285200	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:52283000-52300400	Weak transcription	Psoas Muscle	Psoas
46	chr10:52283400-52285400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:52283400-52286000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr10:52283600-52288200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr10:52283800-52287200	Weak transcription	Right Atrium	heart
50	chr10:52283800-52288600	Weak transcription	H9 Cell Line	embryonic stem cell

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