Variant report

Variant	rs12099407
Chromosome Location	chr11:83662438-83662439
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17146848	1.00[YRI][hapmap]
rs2077731	1.00[YRI][hapmap]
rs7934379	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83660000-83662600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:83660000-83662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:83660000-83664200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:83660400-83662800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:83660600-83664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr11:83661800-83663000	Enhancers	Brain Substantia Nigra	brain
7	chr11:83661800-83663200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:83662400-83662600	Enhancers	Brain Angular Gyrus	brain
9	chr11:83662400-83662800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:83662400-83662800	Enhancers	Brain Germinal Matrix	brain
11	chr11:83662400-83663000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:83662400-83663000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:83662400-83663000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:83662400-83663000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr11:83662400-83663200	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:83662400-83663200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:83662400-83663200	Enhancers	Stomach Mucosa	stomach
18	chr11:83662400-83663400	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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