Variant report

Variant	rs7934379
Chromosome Location	chr11:83661168-83661169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12099407	1.00[CEU][hapmap]
rs12786173	1.00[MEX][hapmap]
rs12790276	1.00[MEX][hapmap]
rs12801228	1.00[MEX][hapmap]
rs12804520	1.00[MEX][hapmap]
rs12804617	1.00[MEX][hapmap]
rs12805402	1.00[MEX][hapmap]
rs12805464	1.00[MEX][hapmap]
rs12808113	1.00[MEX][hapmap]
rs1319736	0.81[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes]
rs2449598	1.00[MEX][hapmap]
rs28420507	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7115103	1.00[MEX][hapmap]
rs963090	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83649200-83662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:83650400-83662400	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83660000-83662400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr11:83660000-83662600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:83660000-83662800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:83660000-83664200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:83660400-83662800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr11:83660600-83664200	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links