Variant report

Variant	rs1319736
Chromosome Location	chr11:83663828-83663829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10898182	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10898183	0.92[ASN][1000 genomes]
rs10898184	0.94[ASN][1000 genomes]
rs10898185	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233815	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233817	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233818	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233820	0.94[ASN][1000 genomes]
rs11233821	1.00[CHB][hapmap];0.86[CHD][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233823	0.94[ASN][1000 genomes]
rs11233824	0.94[ASN][1000 genomes]
rs11233827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233830	1.00[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233831	0.94[ASN][1000 genomes]
rs11233832	0.94[ASN][1000 genomes]
rs11233837	0.94[ASN][1000 genomes]
rs11233842	0.92[ASN][1000 genomes]
rs12222190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12225678	0.94[ASN][1000 genomes]
rs12278503	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1384753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28420507	0.97[AFR][1000 genomes]
rs790366	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7934379	0.81[ASW][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83660000-83664200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:83660600-83664200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83662800-83667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:83663400-83665600	Weak transcription	Fetal Lung	lung
9	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:83663600-83664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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