Variant report

Variant	rs12278503
Chromosome Location	chr11:83651769-83651770
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10898182	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898183	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10898184	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10898185	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233815	0.82[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes]
rs11233817	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233818	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs11233819	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11233820	1.00[ASN][1000 genomes]
rs11233821	0.92[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs11233822	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11233823	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233824	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11233827	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11233830	0.82[CEU][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs11233831	1.00[ASN][1000 genomes]
rs11233832	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11233837	1.00[ASN][1000 genomes]
rs11233842	0.96[ASN][1000 genomes]
rs12222190	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12225678	1.00[ASN][1000 genomes]
rs1319736	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1384753	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs790366	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12278503	SERPINA1	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83639600-83659400	Weak transcription	Ovary	ovary
3	chr11:83649200-83662400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:83650400-83662400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links