Variant report

Variant	rs12101832
Chromosome Location	chr15:42514103-42514104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:42514019-42514296	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr15:42513894-42514425	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42513814..42516638-chr15:42517068..42519748,2	K562	blood:

Variant related genes	Relation type
TMEM87A	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12101827	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16972896	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1054102	chr15:42493052-42528765	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42500800-42563200	Weak transcription	Stomach Mucosa	stomach
2	chr15:42501000-42518600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:42501000-42518800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42501000-42520800	Weak transcription	Psoas Muscle	Psoas
5	chr15:42501000-42534800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:42501000-42536600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:42501000-42536800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:42501000-42538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:42501200-42514200	Weak transcription	Right Ventricle	heart
10	chr15:42501200-42514600	Weak transcription	Pancreas	Pancrea
11	chr15:42501200-42523200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr15:42501200-42532400	Strong transcription	Fetal Muscle Trunk	muscle
13	chr15:42501800-42536800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:42502000-42521200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:42502000-42535000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:42502200-42534000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr15:42502200-42536600	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:42502400-42519600	Strong transcription	Fetal Intestine Large	intestine
19	chr15:42502800-42535200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:42502800-42536400	Strong transcription	Fetal Muscle Leg	muscle
21	chr15:42503200-42517600	Weak transcription	Gastric	stomach
22	chr15:42503200-42544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:42504000-42516200	Weak transcription	Esophagus	oesophagus
24	chr15:42504000-42516200	Weak transcription	A549	lung
25	chr15:42504000-42517800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:42505800-42514200	Weak transcription	Aorta	Aorta
27	chr15:42505800-42515600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr15:42505800-42516200	Weak transcription	Spleen	Spleen
29	chr15:42505800-42516400	Weak transcription	Small Intestine	intestine
30	chr15:42506800-42532000	Strong transcription	Placenta	Placenta
31	chr15:42508000-42532200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:42508200-42520400	Strong transcription	Fetal Thymus	thymus
33	chr15:42508200-42525000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:42509400-42535200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:42510000-42515800	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr15:42510800-42520200	Strong transcription	Sigmoid Colon	Sigmoid Colon
37	chr15:42511000-42515600	Weak transcription	Ovary	ovary
38	chr15:42511200-42514600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:42511400-42514200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:42511400-42515200	Weak transcription	HSMMtube	muscle
41	chr15:42511400-42515400	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:42511400-42516200	Weak transcription	Fetal Brain Male	brain
43	chr15:42511600-42514200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:42511800-42514600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:42511800-42515400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:42511800-42515400	Weak transcription	Brain Germinal Matrix	brain
47	chr15:42511800-42516200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:42511800-42516400	Weak transcription	K562	blood
49	chr15:42511800-42517600	Weak transcription	Brain Angular Gyrus	brain
50	chr15:42511800-42519000	Weak transcription	Fetal Heart	heart

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