Variant report

Variant	rs16972896
Chromosome Location	chr15:42524104-42524105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42519855..42522607-chr15:42524004..42525780,2	K562	blood:
2	chr15:42498973..42502345-chr15:42523295..42525097,3	K562	blood:
3	chr15:42518203..42520282-chr15:42521732..42524296,3	MCF-7	breast:
4	chr15:42523615..42525388-chr15:42565299..42567671,2	K562	blood:

Variant related genes	Relation type
ENSG00000261002	Chromatin interaction
ENSG00000166887	Chromatin interaction
ENSG00000103978	Chromatin interaction
ENSG00000214013	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12101827	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12101832	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28364475	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1054102	chr15:42493052-42528765	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv1799961	chr15:42522773-42545863	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1832380	chr15:42522773-42545863	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42500800-42563200	Weak transcription	Stomach Mucosa	stomach
2	chr15:42501000-42534800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:42501000-42536600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:42501000-42536800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:42501000-42538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:42501200-42532400	Strong transcription	Fetal Muscle Trunk	muscle
7	chr15:42501800-42536800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:42502000-42535000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr15:42502200-42534000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:42502200-42536600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr15:42502800-42535200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:42502800-42536400	Strong transcription	Fetal Muscle Leg	muscle
13	chr15:42503200-42544000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:42506800-42532000	Strong transcription	Placenta	Placenta
15	chr15:42508000-42532200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:42508200-42525000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:42509400-42535200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:42511800-42536800	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr15:42513200-42532200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:42513800-42534800	Strong transcription	Liver	Liver
21	chr15:42514000-42526600	Strong transcription	Left Ventricle	heart
22	chr15:42514000-42534800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr15:42514000-42535200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:42514200-42524200	Strong transcription	Stomach Smooth Muscle	stomach
25	chr15:42514200-42526600	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr15:42514200-42527000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr15:42514200-42532400	Strong transcription	Adipose Nuclei	Adipose
28	chr15:42514200-42535200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:42514200-42535200	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr15:42514400-42531800	Strong transcription	Primary T cells from cord blood	blood
31	chr15:42514400-42533600	Strong transcription	Primary T cells fromperipheralblood	blood
32	chr15:42514400-42534800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr15:42514400-42535000	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:42514400-42535000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:42514400-42536400	Strong transcription	Rectal Mucosa Donor 29	rectum
36	chr15:42514400-42536400	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr15:42514400-42537200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr15:42514600-42535000	Strong transcription	HUES48 Cell Line	embryonic stem cell
39	chr15:42514800-42532000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:42515000-42535400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:42515000-42544600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr15:42515200-42526400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr15:42515200-42526800	Strong transcription	Brain Anterior Caudate	brain
44	chr15:42515200-42534800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:42515400-42535400	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr15:42515600-42525600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:42515600-42526800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:42515600-42530400	Strong transcription	NH-A	brain
49	chr15:42515600-42532600	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr15:42515600-42535000	Strong transcription	Primary B cells from cord blood	blood

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