Variant report

Variant	rs12102860
Chromosome Location	chr16:79930839-79930840
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11150228	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865475	1.00[ASN][1000 genomes]
rs16951578	0.81[EUR][1000 genomes]
rs28470178	1.00[ASN][1000 genomes]
rs4077449	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56169534	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73574098	0.81[EUR][1000 genomes]
rs73576062	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9922706	0.81[EUR][1000 genomes]
rs9922755	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924838	1.00[ASN][1000 genomes]
rs9924864	1.00[ASN][1000 genomes]
rs9935635	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79929000-79933400	Enhancers	Liver	Liver
3	chr16:79929000-79934400	Enhancers	Fetal Intestine Small	intestine
4	chr16:79929200-79934600	Enhancers	Fetal Intestine Large	intestine
5	chr16:79929400-79934000	Weak transcription	Small Intestine	intestine
6	chr16:79929400-79934400	Enhancers	Duodenum Mucosa	Duodenum
7	chr16:79929600-79931800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:79930400-79931000	Enhancers	HepG2	liver
9	chr16:79930800-79931400	Enhancers	K562	blood
10	chr16:79930800-79932000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links