Variant report

Variant	rs9924838
Chromosome Location	chr16:79935649-79935650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11150227	0.80[EUR][1000 genomes]
rs11150228	1.00[ASN][1000 genomes]
rs11865475	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102860	1.00[ASN][1000 genomes]
rs13337590	0.80[EUR][1000 genomes]
rs28470178	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077449	1.00[ASN][1000 genomes]
rs73576062	1.00[ASN][1000 genomes]
rs9922755	1.00[ASN][1000 genomes]
rs9924864	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79931800-79936400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:79932200-79936400	Weak transcription	Osteobl	bone
3	chr16:79934200-79936600	Weak transcription	NH-A	brain
4	chr16:79934400-79936200	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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