Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:79930002..79932822-chr16:79943489..79945952,3	K562	blood:
2	chr16:79930657..79933146-chr16:79934567..79938494,4	K562	blood:
3	chr16:79931098..79932051-chr3:134105897..134106490,2	MCF-7	breast:
4	chr16:79930657..79933146-chr16:79935922..79938494,3	K562	blood:

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11150228	1.00[ASN][1000 genomes]
rs11865475	1.00[ASN][1000 genomes]
rs12102860	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28470178	1.00[ASN][1000 genomes]
rs56169534	0.89[EUR][1000 genomes]
rs73576062	1.00[ASN][1000 genomes]
rs9922755	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9924838	1.00[ASN][1000 genomes]
rs9924864	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573290	chr16:79853267-79939504	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv573291	chr16:79881386-79931595	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79908800-79931400	Weak transcription	Right Atrium	heart
2	chr16:79929000-79933400	Enhancers	Liver	Liver
3	chr16:79929000-79934400	Enhancers	Fetal Intestine Small	intestine
4	chr16:79929200-79934600	Enhancers	Fetal Intestine Large	intestine
5	chr16:79929400-79934000	Weak transcription	Small Intestine	intestine
6	chr16:79929400-79934400	Enhancers	Duodenum Mucosa	Duodenum
7	chr16:79929600-79931800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:79930800-79931400	Enhancers	K562	blood
9	chr16:79930800-79932000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr16:79931000-79931800	Enhancers	Fetal Muscle Leg	muscle
11	chr16:79931000-79931800	Enhancers	Ovary	ovary
12	chr16:79931000-79931800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr16:79931000-79931800	Enhancers	A549	lung
14	chr16:79931000-79932000	Enhancers	Colonic Mucosa	Colon
15	chr16:79931000-79932000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr16:79931000-79932000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr16:79931000-79932200	Flanking Active TSS	HepG2	liver
18	chr16:79931200-79931600	Enhancers	Fetal Muscle Trunk	muscle
19	chr16:79931200-79932000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr16:79931200-79932000	Enhancers	Fetal Stomach	stomach
21	chr16:79931200-79932000	Enhancers	Stomach Mucosa	stomach
22	chr16:79931200-79932200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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