Variant report

Variant	rs12103023
Chromosome Location	chr16:48033154-48033155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs13330065	0.90[AMR][1000 genomes]
rs13330477	0.90[AMR][1000 genomes]
rs13337029	0.80[AMR][1000 genomes]
rs28508022	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28533708	0.94[AFR][1000 genomes]
rs3887008	0.90[AMR][1000 genomes]
rs3899422	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7184685	0.90[AMR][1000 genomes]
rs7185342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7190168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7194254	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7196906	0.90[AMR][1000 genomes]
rs7198239	0.90[AMR][1000 genomes]
rs7199647	0.90[AMR][1000 genomes]
rs7200033	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7202404	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74016242	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs74016243	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs74016244	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs74016247	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74016251	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016265	0.88[AFR][1000 genomes]
rs8044501	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs8050751	0.88[AFR][1000 genomes]
rs8053889	0.90[AMR][1000 genomes]
rs8056932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9923542	0.90[AMR][1000 genomes]
rs9934257	0.90[AMR][1000 genomes]
rs9935906	0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9938295	0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9939073	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9940106	0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48032400-48035600	Enhancers	Brain Germinal Matrix	brain
2	chr16:48032400-48036600	Enhancers	Fetal Brain Male	brain
3	chr16:48033000-48033800	Enhancers	Fetal Brain Female	brain

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