Variant report

Variant	rs28533708
Chromosome Location	chr16:48056692-48056693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12103023	0.94[AFR][1000 genomes]
rs28508022	0.97[AFR][1000 genomes]
rs3899422	0.91[AFR][1000 genomes]
rs7185342	0.84[AFR][1000 genomes]
rs7190168	0.84[AFR][1000 genomes]
rs7194254	0.85[AFR][1000 genomes]
rs7200033	0.91[AFR][1000 genomes]
rs7202404	0.90[AFR][1000 genomes]
rs74016242	0.87[AFR][1000 genomes]
rs74016243	0.88[AFR][1000 genomes]
rs74016244	0.88[AFR][1000 genomes]
rs74016247	0.88[AFR][1000 genomes]
rs74016251	0.88[AFR][1000 genomes]
rs74016265	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044501	0.98[AFR][1000 genomes]
rs8050751	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8055464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056932	0.92[AFR][1000 genomes]
rs9935906	0.87[AFR][1000 genomes]
rs9938295	0.90[AFR][1000 genomes]
rs9939073	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48055800-48059800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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