Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12103023	0.88[AFR][1000 genomes]
rs13337029	1.00[EUR][1000 genomes]
rs1985323	1.00[MEX][hapmap]
rs28508022	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28533708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3887008	1.00[EUR][1000 genomes]
rs3899422	0.86[AFR][1000 genomes]
rs6500353	1.00[MEX][hapmap]
rs7184685	1.00[EUR][1000 genomes]
rs7185342	0.81[AFR][1000 genomes]
rs7190168	0.81[AFR][1000 genomes]
rs7194254	0.82[AFR][1000 genomes]
rs7200033	0.86[AFR][1000 genomes]
rs7202404	0.95[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016242	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016243	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016244	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016247	0.85[AFR][1000 genomes]
rs74016251	0.85[AFR][1000 genomes]
rs74016265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8044501	0.92[AFR][1000 genomes]
rs8055464	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8056932	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9923542	1.00[EUR][1000 genomes]
rs9926879	1.00[MEX][hapmap]
rs9935906	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9938295	0.92[ASW][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9939073	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1798	chr16:48035871-48080541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48060000-48060400	Enhancers	H1 Cell Line	embryonic stem cell
2	chr16:48060000-48060600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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