Variant report

Variant	rs12105351
Chromosome Location	chr2:77114245-77114246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10170002	0.86[CHB][hapmap]
rs10193253	0.86[CHB][hapmap]
rs10193677	0.85[CHB][hapmap]
rs10195967	0.92[JPT][hapmap]
rs10199076	0.82[JPT][hapmap]
rs10204605	0.86[CHB][hapmap]
rs10211427	0.92[JPT][hapmap]
rs10211542	0.92[JPT][hapmap]
rs10520173	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10520175	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11126578	0.85[JPT][hapmap]
rs11884377	0.86[CHB][hapmap]
rs11886794	0.93[ASN][1000 genomes]
rs11899047	1.00[JPT][hapmap]
rs13384774	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13396539	1.00[JPT][hapmap]
rs13400981	0.92[JPT][hapmap]
rs13413625	0.86[CHB][hapmap]
rs13417401	0.82[CHB][hapmap]
rs1446711	0.90[JPT][hapmap]
rs1446719	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1562343	1.00[JPT][hapmap]
rs17013284	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17013289	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17013370	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17013382	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17013386	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17013452	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17013535	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17013563	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17013580	1.00[JPT][hapmap]
rs17040489	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17040494	1.00[JPT][hapmap]
rs1882350	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1929450	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2103377	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35601932	0.92[ASN][1000 genomes]
rs41375150	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs57059027	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57972121	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60022618	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60837510	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61538333	0.92[ASN][1000 genomes]
rs6708694	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6751017	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9309507	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006086	chr2:77031163-77128651	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1007648	chr2:77034405-77128651	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874326	chr2:77055883-77148261	Enhancers Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv582251	chr2:77055883-77154515	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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