Variant report

Variant	rs1446711
Chromosome Location	chr2:77202938-77202939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10165789	0.80[EUR][1000 genomes]
rs10168341	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10170002	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10183312	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10186670	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10187924	0.84[EUR][1000 genomes]
rs10193677	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10194816	0.83[EUR][1000 genomes]
rs10195940	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10195967	0.82[JPT][hapmap]
rs10198223	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10204605	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10205089	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10205987	0.84[EUR][1000 genomes]
rs10209929	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10211427	0.81[JPT][hapmap]
rs10211542	0.81[JPT][hapmap]
rs10520170	0.89[EUR][1000 genomes]
rs10520173	0.91[JPT][hapmap]
rs10520175	0.91[JPT][hapmap]
rs11126577	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11884377	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11885408	0.90[EUR][1000 genomes]
rs11886263	0.85[EUR][1000 genomes]
rs11886826	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11895300	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11899047	0.90[JPT][hapmap]
rs11899785	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12105351	0.90[JPT][hapmap]
rs12988557	0.83[EUR][1000 genomes]
rs13007111	0.82[EUR][1000 genomes]
rs13016203	0.97[EUR][1000 genomes]
rs13025838	0.92[EUR][1000 genomes]
rs13384774	0.91[JPT][hapmap]
rs13396539	0.91[JPT][hapmap]
rs13400981	0.81[JPT][hapmap]
rs13413625	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13414920	0.88[EUR][1000 genomes]
rs13417401	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13423489	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1446719	0.89[JPT][hapmap]
rs1562343	0.90[JPT][hapmap]
rs17013284	0.91[JPT][hapmap]
rs17013289	0.91[JPT][hapmap]
rs17013370	0.90[JPT][hapmap]
rs17013381	0.89[EUR][1000 genomes]
rs17013382	0.91[JPT][hapmap]
rs17013386	0.90[JPT][hapmap]
rs17013387	0.89[EUR][1000 genomes]
rs17013449	0.90[EUR][1000 genomes]
rs17013452	0.90[JPT][hapmap]
rs17013535	0.90[JPT][hapmap]
rs17013563	0.90[JPT][hapmap]
rs17013580	0.91[JPT][hapmap]
rs17040489	0.90[JPT][hapmap]
rs17040494	0.91[JPT][hapmap]
rs1882350	0.91[JPT][hapmap]
rs1929450	0.91[JPT][hapmap]
rs1947115	0.96[EUR][1000 genomes]
rs1947116	0.94[EUR][1000 genomes]
rs2103377	0.90[JPT][hapmap]
rs34256194	0.91[EUR][1000 genomes]
rs35573263	0.81[EUR][1000 genomes]
rs41375150	0.90[JPT][hapmap]
rs4852421	0.84[EUR][1000 genomes]
rs4852423	0.85[EUR][1000 genomes]
rs6708694	0.91[JPT][hapmap]
rs6751017	0.91[JPT][hapmap]
rs7583560	0.96[EUR][1000 genomes]
rs9309506	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9309507	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9973564	0.89[EUR][1000 genomes]
rs9973567	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2756931	chr2:77185856-77209051	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2759066	chr2:77185856-77209051	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3382201	chr2:77199044-77203242	Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv2762264	chr2:77202107-77206452	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77202600-77204200	Enhancers	HUVEC	blood vessel

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