Variant report

Variant	rs17013580
Chromosome Location	chr2:77230292-77230293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10048661	0.81[ASN][1000 genomes]
rs10170002	0.88[CHB][hapmap]
rs10186927	0.86[CHB][hapmap]
rs10189354	0.81[JPT][hapmap]
rs10193253	0.88[CHB][hapmap]
rs10193677	0.86[CHB][hapmap]
rs10195940	1.00[CHB][hapmap]
rs10195967	0.93[JPT][hapmap]
rs10199076	0.84[JPT][hapmap]
rs10204605	0.88[CHB][hapmap]
rs10205089	1.00[CHB][hapmap]
rs10211427	0.92[JPT][hapmap]
rs10211542	0.93[JPT][hapmap]
rs10520173	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10520175	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11126578	0.89[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes]
rs11884377	0.88[CHB][hapmap]
rs11889881	0.97[ASN][1000 genomes]
rs11899047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12105351	1.00[JPT][hapmap]
rs12233136	0.81[JPT][hapmap];0.94[AMR][1000 genomes]
rs13384774	0.88[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13388164	0.95[ASN][1000 genomes]
rs13396539	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13400981	0.93[JPT][hapmap]
rs13413625	0.88[CHB][hapmap]
rs13414012	0.81[ASN][1000 genomes]
rs13417401	0.85[CHB][hapmap]
rs1446708	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs1446711	0.91[JPT][hapmap]
rs1446719	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1562343	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013284	1.00[JPT][hapmap]
rs17013289	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17013370	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs17013382	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17013386	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17013452	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17013534	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17013535	0.88[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17013563	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17040489	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17040494	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1882350	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1929450	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs2103377	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs41375150	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55765941	0.81[ASN][1000 genomes]
rs57522758	0.99[ASN][1000 genomes]
rs59645157	0.97[ASN][1000 genomes]
rs61335199	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6708694	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs6751017	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7591191	0.99[ASN][1000 genomes]
rs9309507	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77225000-77231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:77228600-77233800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:77229200-77233800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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