Variant report
| Variant | rs17013534 |
|---|---|
| Chromosome Location | chr2:77224206-77224207 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10048661 | 0.81[AMR][1000 genomes] |
| rs10520173 | 0.84[ASN][1000 genomes] |
| rs10520175 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11126578 | 0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11889881 | 0.92[ASN][1000 genomes] |
| rs11899047 | 0.90[ASN][1000 genomes] |
| rs12233066 | 0.82[ASN][1000 genomes] |
| rs12233069 | 0.82[ASN][1000 genomes] |
| rs12233136 | 0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs13384774 | 0.90[ASN][1000 genomes] |
| rs13388164 | 0.90[ASN][1000 genomes] |
| rs13396539 | 0.86[ASN][1000 genomes] |
| rs13414012 | 0.81[AMR][1000 genomes] |
| rs1446719 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17013452 | 0.83[ASN][1000 genomes] |
| rs17013535 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17013563 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17013580 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs41375150 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55765941 | 0.81[AMR][1000 genomes] |
| rs57059027 | 0.83[ASN][1000 genomes] |
| rs57522758 | 0.91[ASN][1000 genomes] |
| rs59645157 | 0.92[ASN][1000 genomes] |
| rs60022618 | 0.83[ASN][1000 genomes] |
| rs60837510 | 0.83[ASN][1000 genomes] |
| rs61335199 | 1.00[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7591191 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv519950 | chr2:77213103-77256291 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv829468 | chr2:77216448-77224533 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv961764 | chr2:77216571-77228053 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:77222800-77224400 | Enhancers | Pancreatic Islets | Pancreatic Islet |
| 2 | chr2:77224200-77224400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 3 | chr2:77224200-77226600 | Enhancers | Foreskin Keratinocyte Primary Cells skin03 | Skin |
