Variant report

Variant	rs61335199
Chromosome Location	chr2:77208290-77208291
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10048661	0.81[AMR][1000 genomes]
rs10520173	0.84[ASN][1000 genomes]
rs10520175	0.99[ASN][1000 genomes]
rs11126578	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11889881	0.88[ASN][1000 genomes]
rs11899047	0.88[ASN][1000 genomes]
rs12233066	0.80[ASN][1000 genomes]
rs12233069	0.80[ASN][1000 genomes]
rs12233136	1.00[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs13384774	0.88[ASN][1000 genomes]
rs13388164	0.85[ASN][1000 genomes]
rs13396539	0.84[ASN][1000 genomes]
rs13414012	0.81[AMR][1000 genomes]
rs1446708	0.82[AFR][1000 genomes]
rs1446719	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs17013452	0.85[ASN][1000 genomes]
rs17013534	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17013535	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17013563	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17013580	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs41375150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55765941	0.81[AMR][1000 genomes]
rs57059027	0.85[ASN][1000 genomes]
rs57522758	0.89[ASN][1000 genomes]
rs59645157	0.88[ASN][1000 genomes]
rs60022618	0.85[ASN][1000 genomes]
rs60837510	0.85[ASN][1000 genomes]
rs7591191	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv2756931	chr2:77185856-77209051	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv2759066	chr2:77185856-77209051	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77206200-77211200	Weak transcription	HUVEC	blood vessel
2	chr2:77206600-77211600	Weak transcription	Fetal Lung	lung
3	chr2:77206800-77211600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr2:77208000-77208600	Enhancers	Pancreatic Islets	Pancreatic Islet

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