Variant report

Variant	rs12233066
Chromosome Location	chr2:77217866-77217867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10520175	0.81[ASN][1000 genomes]
rs11126578	0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11899047	0.86[CHD][hapmap];0.82[MEX][hapmap]
rs11901979	0.87[JPT][hapmap]
rs12233069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12233136	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13396539	0.90[CHB][hapmap]
rs1446708	0.93[JPT][hapmap]
rs1446719	0.83[ASN][1000 genomes]
rs17013370	1.00[MEX][hapmap]
rs17013386	1.00[MEX][hapmap]
rs17013534	0.82[ASN][1000 genomes]
rs17013535	1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs17013563	1.00[MEX][hapmap]
rs17013567	0.93[JPT][hapmap]
rs41375150	1.00[MEX][hapmap];0.82[ASN][1000 genomes]
rs61335199	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv829468	chr2:77216448-77224533	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
5	nsv961764	chr2:77216571-77228053	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77214000-77220400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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