Variant report
| Variant | rs10048661 |
|---|---|
| Chromosome Location | chr2:77253904-77253905 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10184102 | 0.82[AMR][1000 genomes] |
| rs10186927 | 1.00[EUR][1000 genomes] |
| rs10196670 | 1.00[EUR][1000 genomes] |
| rs11126578 | 0.81[AMR][1000 genomes] |
| rs11889881 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11891271 | 0.81[ASN][1000 genomes] |
| rs11899047 | 0.81[ASN][1000 genomes] |
| rs12233136 | 0.81[AMR][1000 genomes] |
| rs13384774 | 0.81[ASN][1000 genomes] |
| rs13388164 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs13403143 | 0.99[ASN][1000 genomes] |
| rs13414012 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1446719 | 0.81[AMR][1000 genomes] |
| rs17013534 | 0.81[AMR][1000 genomes] |
| rs17013535 | 0.81[AMR][1000 genomes] |
| rs17013563 | 0.81[AMR][1000 genomes] |
| rs17013580 | 0.81[ASN][1000 genomes] |
| rs28876375 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28896632 | 0.80[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs41375150 | 0.81[AMR][1000 genomes] |
| rs55765941 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55788766 | 1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs57522758 | 0.82[ASN][1000 genomes] |
| rs59645157 | 0.83[ASN][1000 genomes] |
| rs60903886 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs61335199 | 0.81[AMR][1000 genomes] |
| rs73940255 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7591191 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv519950 | chr2:77213103-77256291 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv997284 | chr2:77233426-77303198 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1007408 | chr2:77235194-77255152 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:77253600-77254000 | Weak transcription | Liver | Liver |
| 2 | chr2:77253800-77255000 | Enhancers | Pancreatic Islets | Pancreatic Islet |
