Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10048661	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10167876	0.81[AFR][1000 genomes]
rs10184102	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11889881	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11899047	0.83[EUR][1000 genomes]
rs13384774	0.83[EUR][1000 genomes]
rs13388164	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13396539	0.83[EUR][1000 genomes]
rs13403143	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414012	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28876375	0.91[ASN][1000 genomes]
rs55765941	0.99[ASN][1000 genomes]
rs55788766	0.90[ASN][1000 genomes]
rs57522758	0.81[ASN][1000 genomes]
rs59645157	0.82[ASN][1000 genomes]
rs60903886	0.87[ASN][1000 genomes]
rs73940226	0.81[AFR][1000 genomes]
rs73940227	0.82[AFR][1000 genomes]
rs73940255	0.83[ASN][1000 genomes]
rs7591191	0.81[ASN][1000 genomes]
rs7591205	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77249600-77250400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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