Variant report

Variant	rs10167876
Chromosome Location	chr2:77239557-77239558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10164510	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10184102	0.88[AFR][1000 genomes]
rs10202852	0.92[YRI][hapmap]
rs11889001	1.00[EUR][1000 genomes]
rs11889881	0.85[AFR][1000 genomes]
rs11902718	1.00[EUR][1000 genomes]
rs13382847	0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13383667	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13410070	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13413740	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13416736	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13429893	1.00[EUR][1000 genomes]
rs17013361	1.00[EUR][1000 genomes]
rs2860936	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28896632	0.81[AFR][1000 genomes]
rs4296455	1.00[EUR][1000 genomes]
rs55870012	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56018259	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6720238	0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72921656	1.00[EUR][1000 genomes]
rs72921658	1.00[EUR][1000 genomes]
rs73940226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940240	1.00[EUR][1000 genomes]
rs73940246	1.00[EUR][1000 genomes]
rs73940262	1.00[EUR][1000 genomes]
rs73940264	1.00[EUR][1000 genomes]
rs73940269	1.00[EUR][1000 genomes]
rs73940270	1.00[EUR][1000 genomes]
rs73940272	1.00[EUR][1000 genomes]
rs7558964	1.00[EUR][1000 genomes]
rs7559563	1.00[EUR][1000 genomes]
rs7577448	1.00[EUR][1000 genomes]
rs7591205	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9808165	0.91[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv519950	chr2:77213103-77256291	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007408	chr2:77235194-77255152	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77232000-77245600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:77236000-77239600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:77236400-77239600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr2:77236400-77240200	Weak transcription	Fetal Lung	lung
5	chr2:77236800-77240400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:77237000-77240200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:77237000-77243800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:77237000-77245400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:77237600-77243600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:77237800-77243600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:77238000-77239600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr2:77238000-77245400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:77238200-77244000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:77238200-77244200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:77239200-77244200	Weak transcription	H9 Cell Line	embryonic stem cell

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