Variant report
| Variant | rs4296455 |
|---|---|
| Chromosome Location | chr2:77217739-77217740 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10167876 | 1.00[EUR][1000 genomes] |
| rs11886430 | 1.00[EUR][1000 genomes] |
| rs11889001 | 1.00[EUR][1000 genomes] |
| rs11902718 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs13383667 | 1.00[EUR][1000 genomes] |
| rs13416736 | 1.00[EUR][1000 genomes] |
| rs13429893 | 1.00[EUR][1000 genomes] |
| rs17013259 | 1.00[EUR][1000 genomes] |
| rs17013361 | 1.00[EUR][1000 genomes] |
| rs56018259 | 1.00[EUR][1000 genomes] |
| rs56887555 | 1.00[EUR][1000 genomes] |
| rs57418699 | 1.00[EUR][1000 genomes] |
| rs59597957 | 1.00[EUR][1000 genomes] |
| rs72921636 | 1.00[EUR][1000 genomes] |
| rs72921656 | 1.00[EUR][1000 genomes] |
| rs72921658 | 1.00[EUR][1000 genomes] |
| rs73940226 | 1.00[EUR][1000 genomes] |
| rs73940227 | 1.00[EUR][1000 genomes] |
| rs73940240 | 1.00[EUR][1000 genomes] |
| rs73940246 | 1.00[EUR][1000 genomes] |
| rs73940262 | 1.00[EUR][1000 genomes] |
| rs73940264 | 1.00[EUR][1000 genomes] |
| rs73940269 | 1.00[EUR][1000 genomes] |
| rs73940270 | 1.00[EUR][1000 genomes] |
| rs73940272 | 1.00[EUR][1000 genomes] |
| rs7558964 | 1.00[EUR][1000 genomes] |
| rs7559563 | 1.00[EUR][1000 genomes] |
| rs7577448 | 1.00[EUR][1000 genomes] |
| rs7591205 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv519950 | chr2:77213103-77256291 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv829468 | chr2:77216448-77224533 | Weak transcription Enhancers | lncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv961764 | chr2:77216571-77228053 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:77214000-77220400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
