Variant report

Variant	rs11889001
Chromosome Location	chr2:77155222-77155223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10167876	1.00[EUR][1000 genomes]
rs11886430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11902718	1.00[EUR][1000 genomes]
rs13383667	1.00[EUR][1000 genomes]
rs13416736	1.00[EUR][1000 genomes]
rs13429893	1.00[EUR][1000 genomes]
rs17013259	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17013361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4296455	1.00[EUR][1000 genomes]
rs56018259	1.00[EUR][1000 genomes]
rs56887555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57418699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59597957	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72921636	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72921656	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72921658	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940226	1.00[EUR][1000 genomes]
rs73940227	1.00[EUR][1000 genomes]
rs73940240	1.00[EUR][1000 genomes]
rs73940246	1.00[EUR][1000 genomes]
rs73940262	1.00[EUR][1000 genomes]
rs73940264	1.00[EUR][1000 genomes]
rs73940269	1.00[EUR][1000 genomes]
rs73940270	1.00[EUR][1000 genomes]
rs73940272	1.00[EUR][1000 genomes]
rs7558964	1.00[EUR][1000 genomes]
rs7559563	1.00[EUR][1000 genomes]
rs7577448	1.00[EUR][1000 genomes]
rs7591205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874322	chr2:77031247-77209750	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	esv2752990	chr2:77038541-77217310	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv874324	chr2:77048896-77201916	Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv874327	chr2:77085752-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv874328	chr2:77096124-77196122	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874329	chr2:77096124-77209750	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv1819739	chr2:77103474-77162163	Enhancers Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv874330	chr2:77103719-77209750	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77146600-77167400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:77154600-77155800	Enhancers	Fetal Brain Male	brain
3	chr2:77154800-77156400	Enhancers	Fetal Brain Female	brain

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