Variant report
| Variant | rs73940246 |
|---|---|
| Chromosome Location | chr2:77270493-77270494 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr2:77270478-77270678 | MCF10A-Er-Src | breast: | n/a | chr2:77270559-77270573 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000263447 | TF binding region |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10167876 | 1.00[EUR][1000 genomes] |
| rs11889001 | 1.00[EUR][1000 genomes] |
| rs11902718 | 1.00[EUR][1000 genomes] |
| rs13383667 | 1.00[EUR][1000 genomes] |
| rs13416736 | 1.00[EUR][1000 genomes] |
| rs13429893 | 1.00[EUR][1000 genomes] |
| rs17013361 | 1.00[EUR][1000 genomes] |
| rs4296455 | 1.00[EUR][1000 genomes] |
| rs56018259 | 1.00[EUR][1000 genomes] |
| rs73940226 | 1.00[EUR][1000 genomes] |
| rs73940227 | 1.00[EUR][1000 genomes] |
| rs73940240 | 0.86[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73940260 | 0.83[AMR][1000 genomes] |
| rs73940262 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73940264 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73940269 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73940270 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73940272 | 1.00[EUR][1000 genomes] |
| rs7558964 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7559563 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7577448 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7581491 | 1.00[AMR][1000 genomes] |
| rs7591205 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834266 | chr2:77120236-77287504 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv949670 | chr2:77125218-77712607 | Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv997284 | chr2:77233426-77303198 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014895 | chr2:77263452-77414507 | Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv874331 | chr2:77264354-77305123 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv961322 | chr2:77267823-77272264 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
