Variant report

Variant	rs73940240
Chromosome Location	chr2:77264240-77264241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10167876	1.00[EUR][1000 genomes]
rs11889001	1.00[EUR][1000 genomes]
rs11902718	1.00[EUR][1000 genomes]
rs13383667	1.00[EUR][1000 genomes]
rs13416736	1.00[EUR][1000 genomes]
rs13429893	1.00[EUR][1000 genomes]
rs17013361	1.00[EUR][1000 genomes]
rs4296455	1.00[EUR][1000 genomes]
rs56018259	1.00[EUR][1000 genomes]
rs73940226	1.00[EUR][1000 genomes]
rs73940227	1.00[EUR][1000 genomes]
rs73940246	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73940262	1.00[EUR][1000 genomes]
rs73940264	1.00[EUR][1000 genomes]
rs73940269	1.00[EUR][1000 genomes]
rs73940270	1.00[EUR][1000 genomes]
rs73940272	1.00[EUR][1000 genomes]
rs7558964	1.00[EUR][1000 genomes]
rs7559563	1.00[EUR][1000 genomes]
rs7577448	1.00[EUR][1000 genomes]
rs7591205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77263000-77265000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:77263000-77265600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:77263400-77265000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:77264000-77264800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:77264000-77265000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:77264200-77264400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr2:77264200-77265200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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