Variant report

Variant	rs73940264
Chromosome Location	chr2:77281516-77281517
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10167876	1.00[EUR][1000 genomes]
rs11889001	1.00[EUR][1000 genomes]
rs11902718	1.00[EUR][1000 genomes]
rs13383667	1.00[EUR][1000 genomes]
rs13416736	1.00[EUR][1000 genomes]
rs13429893	1.00[EUR][1000 genomes]
rs17013361	1.00[EUR][1000 genomes]
rs4296455	1.00[EUR][1000 genomes]
rs56018259	1.00[EUR][1000 genomes]
rs73940226	1.00[EUR][1000 genomes]
rs73940227	1.00[EUR][1000 genomes]
rs73940240	1.00[EUR][1000 genomes]
rs73940246	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73940262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940269	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940270	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73940272	1.00[EUR][1000 genomes]
rs7558964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7577448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7581491	0.83[AMR][1000 genomes]
rs7591205	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1014895	chr2:77263452-77414507	Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv874331	chr2:77264354-77305123	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv458285	chr2:77276201-77345491	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
7	nsv582252	chr2:77276201-77345491	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77278000-77282200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:77278800-77281600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr2:77278800-77286400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:77279000-77284000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:77280200-77282200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:77280400-77281600	Weak transcription	Brain Germinal Matrix	brain
7	chr2:77280800-77286200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:77281200-77281600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links