Variant report

Variant	rs10189354
Chromosome Location	chr2:77256345-77256346
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10048661	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10186927	1.00[EUR][1000 genomes]
rs10195967	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10196670	1.00[EUR][1000 genomes]
rs10199076	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10211427	0.91[JPT][hapmap];1.00[YRI][hapmap]
rs10211542	0.90[JPT][hapmap]
rs10520173	0.81[JPT][hapmap]
rs10520175	0.81[JPT][hapmap]
rs11126578	0.81[AMR][1000 genomes]
rs11891271	0.84[ASN][1000 genomes]
rs11899047	0.81[JPT][hapmap]
rs12233136	0.81[AMR][1000 genomes]
rs13384774	0.81[JPT][hapmap]
rs13396539	0.81[JPT][hapmap]
rs13400981	0.90[JPT][hapmap];1.00[YRI][hapmap]
rs13403143	0.95[ASN][1000 genomes]
rs13414012	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1446696	0.94[YRI][hapmap]
rs1446719	0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs1562343	0.81[JPT][hapmap]
rs17013284	0.81[JPT][hapmap]
rs17013289	0.81[JPT][hapmap]
rs17013370	0.81[JPT][hapmap]
rs17013382	0.81[JPT][hapmap]
rs17013386	0.81[JPT][hapmap]
rs17013452	0.81[JPT][hapmap]
rs17013534	0.81[AMR][1000 genomes]
rs17013535	0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs17013563	0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs17013580	0.81[JPT][hapmap]
rs17013635	0.84[YRI][hapmap];0.83[AFR][1000 genomes]
rs17040489	0.81[JPT][hapmap]
rs17040494	0.81[JPT][hapmap]
rs1882350	0.81[JPT][hapmap]
rs1929450	0.81[JPT][hapmap]
rs28876375	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28896632	0.95[ASN][1000 genomes]
rs41375150	0.81[JPT][hapmap];0.81[AMR][1000 genomes]
rs55765941	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55788766	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60903886	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61335199	0.81[AMR][1000 genomes]
rs6708694	0.81[JPT][hapmap]
rs6751017	0.81[JPT][hapmap]
rs73940255	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834266	chr2:77120236-77287504	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv949670	chr2:77125218-77712607	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv997284	chr2:77233426-77303198	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:77255000-77256600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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