Variant report

Variant	rs12105839
Chromosome Location	chr2:183007091-183007092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10497592	1.00[MEX][hapmap]
rs10497595	0.83[LWK][hapmap];0.91[MKK][hapmap];0.85[AFR][1000 genomes]
rs11898512	1.00[MKK][hapmap]
rs16822346	1.00[MEX][hapmap]
rs16822453	1.00[MEX][hapmap]
rs16822454	1.00[MEX][hapmap]
rs16822458	1.00[MEX][hapmap]
rs16822482	1.00[MEX][hapmap]
rs16822667	0.82[YRI][hapmap]
rs16822709	0.82[YRI][hapmap]
rs16822745	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822749	0.91[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822768	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16822776	0.89[AFR][1000 genomes]
rs16823678	0.85[AFR][1000 genomes]
rs36089439	0.87[AMR][1000 genomes]
rs7588817	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182996800-183009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:182998600-183024000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:182999200-183016000	Weak transcription	Gastric	stomach
4	chr2:182999600-183008800	Weak transcription	Aorta	Aorta
5	chr2:183000000-183009200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:183002400-183013000	Weak transcription	Left Ventricle	heart
7	chr2:183005600-183008800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:183005600-183008800	Weak transcription	Adipose Nuclei	Adipose
9	chr2:183005600-183009200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr2:183005800-183008800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr2:183005800-183008800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:183006800-183007200	Enhancers	Fetal Heart	heart
13	chr2:183006800-183007200	Enhancers	Ovary	ovary
14	chr2:183007000-183007200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:183007000-183007200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:183007000-183007200	Enhancers	Pancreas	Pancrea
17	chr2:183007000-183007200	Enhancers	Psoas Muscle	Psoas
18	chr2:183007000-183007200	Enhancers	Right Atrium	heart
19	chr2:183007000-183007200	Enhancers	HUVEC	blood vessel
20	chr2:183007000-183007800	Enhancers	Skeletal Muscle Female	skeletal muscle

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