Variant report

Variant	rs16822482
Chromosome Location	chr2:182928074-182928075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10497592	1.00[MEX][hapmap]
rs12105839	1.00[MEX][hapmap]
rs16822343	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822346	1.00[MEX][hapmap]
rs16822359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822405	0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822453	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822454	1.00[MEX][hapmap]
rs16822458	1.00[MEX][hapmap]
rs16822511	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214141	1.00[AMR][1000 genomes]
rs6711469	1.00[AMR][1000 genomes]
rs7588817	1.00[MEX][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182903200-182928400	Weak transcription	Left Ventricle	heart
2	chr2:182918400-182928400	Weak transcription	Fetal Thymus	thymus
3	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
4	chr2:182921200-182928800	Weak transcription	Fetal Heart	heart
5	chr2:182926400-182928600	Enhancers	Liver	Liver
6	chr2:182926400-182928600	Enhancers	HepG2	liver
7	chr2:182926800-182929600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr2:182927000-182928400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:182927200-182929400	Enhancers	Fetal Intestine Small	intestine
10	chr2:182927400-182928400	Weak transcription	Fetal Intestine Large	intestine
11	chr2:182927800-182928200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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