Variant report

Variant	rs16822511
Chromosome Location	chr2:182933783-182933784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:182602861..182608453-chr2:182932595..182937475,8	MCF-7	breast:
2	chr2:182920138..182923080-chr2:182928492..182933941,4	MCF-7	breast:
3	chr2:182780128..182781947-chr2:182932666..182935020,2	MCF-7	breast:
4	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
5	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
6	chr2:182817173..182820354-chr2:182932673..182935765,3	MCF-7	breast:
7	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
8	chr2:182755436..182758763-chr2:182932137..182938145,9	MCF-7	breast:
9	chr2:182759806..182765656-chr2:182931890..182935341,6	MCF-7	breast:
10	chr2:182770558..182778362-chr2:182931728..182936504,7	MCF-7	breast:
11	chr2:182796425..182800608-chr2:182933282..182936445,5	MCF-7	breast:
12	chr2:182933565..182934313-chr2:182943483..182944173,2	MCF-7	breast:
13	chr2:182925951..182930145-chr2:182930347..182935935,6	MCF-7	breast:
14	chr2:182882960..182887260-chr2:182931387..182935614,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000221023	Chromatin interaction
ENSG00000138434	Chromatin interaction
ENSG00000260742	Chromatin interaction
ENSG00000150722	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16822343	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822359	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822405	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822453	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822482	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214141	1.00[AMR][1000 genomes]
rs6711469	1.00[AMR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
3	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
4	chr2:182930200-182935200	Enhancers	Hela-S3	cervix
5	chr2:182930600-182934800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:182930800-182934000	Enhancers	Osteobl	bone
7	chr2:182930800-182934200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:182930800-182934200	Enhancers	HUVEC	blood vessel
9	chr2:182931000-182933800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:182931000-182934000	Enhancers	Fetal Lung	lung
11	chr2:182931200-182934800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:182931200-182934800	Enhancers	NHLF	lung
13	chr2:182932400-182933800	Weak transcription	NH-A	brain
14	chr2:182932600-182934800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr2:182932800-182934400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:182932800-182934400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:182933000-182933800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:182933000-182933800	Enhancers	Liver	Liver
19	chr2:182933000-182934200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr2:182933000-182934200	Enhancers	NHEK	skin
21	chr2:182933000-182934800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr2:182933200-182933800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr2:182933200-182937800	Weak transcription	Fetal Thymus	thymus
24	chr2:182933200-182942400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr2:182933400-182934000	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr2:182933400-182934000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr2:182933400-182934200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:182933600-182933800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr2:182933600-182934000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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