Variant report

Variant	rs16822343
Chromosome Location	chr2:182881434-182881435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182879005..182882272-chr2:182882883..182886992,5	MCF-7	breast:
2	chr2:182880540..182889219-chr2:182930483..182937514,17	MCF-7	breast:
3	chr2:182877761..182879863-chr2:182881055..182882615,2	MCF-7	breast:
4	chr2:182880362..182889935-chr2:182937119..182944893,30	MCF-7	breast:
5	chr2:182806851..182810464-chr2:182880780..182885268,4	MCF-7	breast:
6	chr2:182878350..182883617-chr2:182884641..182888824,4	MCF-7	breast:
7	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:
8	chr2:182763521..182768832-chr2:182881197..182883799,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16822359	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822405	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822453	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822482	0.91[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822511	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58214141	1.00[AMR][1000 genomes]
rs6711469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182843400-182904000	Weak transcription	Thymus	Thymus
2	chr2:182879000-182883000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:182879800-182885000	Weak transcription	Fetal Thymus	thymus
4	chr2:182880800-182884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:182880800-182885400	Weak transcription	Stomach Mucosa	stomach
6	chr2:182881000-182882800	Weak transcription	Osteobl	bone
7	chr2:182881200-182882800	Weak transcription	NH-A	brain
8	chr2:182881200-182883200	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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