Variant report

Variant	rs6711469
Chromosome Location	chr2:182940264-182940265
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:182753389..182769521-chr2:182932013..182949608,79	MCF-7	breast:
2	chr2:182604943..182606476-chr2:182937858..182940563,2	MCF-7	breast:
3	chr2:182523225..182525727-chr2:182940001..182942604,2	MCF-7	breast:
4	chr2:182780032..182782106-chr2:182940253..182942043,2	MCF-7	breast:
5	chr2:182940136..182945901-chr2:182990915..182998605,17	MCF-7	breast:
6	chr2:182799515..182801884-chr2:182939610..182944921,5	MCF-7	breast:
7	chr2:182807491..182809203-chr2:182939586..182941530,2	MCF-7	breast:
8	chr2:182753988..182769660-chr2:182938612..182954194,58	MCF-7	breast:
9	chr2:182604086..182610331-chr2:182940196..182944056,7	MCF-7	breast:
10	chr2:182816987..182819157-chr2:182939958..182941643,2	MCF-7	breast:
11	chr2:182880362..182889935-chr2:182937119..182944893,30	MCF-7	breast:
12	chr2:182932067..182937899-chr2:182939888..182947237,17	MCF-7	breast:
13	chr2:182880158..182888359-chr2:182937576..182947086,29	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16822343	1.00[AMR][1000 genomes]
rs16822359	1.00[AMR][1000 genomes]
rs16822405	1.00[AMR][1000 genomes]
rs16822453	1.00[AMR][1000 genomes]
rs16822482	1.00[AMR][1000 genomes]
rs16822511	1.00[AMR][1000 genomes]
rs58214141	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart
2	chr2:182929600-182942200	Weak transcription	Fetal Heart	heart
3	chr2:182933200-182942400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:182934000-182944800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:182934200-182942200	Weak transcription	HUVEC	blood vessel
6	chr2:182934200-182943800	Weak transcription	Stomach Mucosa	stomach
7	chr2:182934800-182941400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:182935200-182940400	Weak transcription	Hela-S3	cervix
9	chr2:182938000-182942600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr2:182938600-182941200	Weak transcription	Liver	Liver
11	chr2:182938600-182941400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:182938600-182942600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:182940000-182940600	Enhancers	Osteobl	bone
14	chr2:182940200-182940400	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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