Variant report

Variant	rs58214141
Chromosome Location	chr2:182950195-182950196
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16822343	1.00[AMR][1000 genomes]
rs16822359	1.00[AMR][1000 genomes]
rs16822405	1.00[AMR][1000 genomes]
rs16822453	1.00[AMR][1000 genomes]
rs16822482	1.00[AMR][1000 genomes]
rs16822511	1.00[AMR][1000 genomes]
rs6711469	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875477	chr2:182938377-183086478	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182947200-182950200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:182949800-182950200	Enhancers	HUVEC	blood vessel
3	chr2:182949800-182950600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:182949800-182950600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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