Variant report

Variant	rs16822458
Chromosome Location	chr2:182924264-182924265
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10497591	0.89[YRI][hapmap];0.83[AMR][1000 genomes]
rs10497592	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10497593	1.00[AMR][1000 genomes]
rs12105839	1.00[MEX][hapmap]
rs16822346	1.00[MEX][hapmap]
rs16822397	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16822446	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16822453	1.00[MEX][hapmap]
rs16822454	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822460	0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822482	1.00[MEX][hapmap]
rs58836112	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61711545	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6750153	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7569843	1.00[AMR][1000 genomes]
rs7578135	1.00[AMR][1000 genomes]
rs7588817	1.00[ASW][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7608147	1.00[AMR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182903200-182928400	Weak transcription	Left Ventricle	heart
2	chr2:182918400-182928400	Weak transcription	Fetal Thymus	thymus
3	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
4	chr2:182921200-182928800	Weak transcription	Fetal Heart	heart
5	chr2:182924200-182925400	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links