Variant report

Variant	rs7569843
Chromosome Location	chr2:182901293-182901294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10497591	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10497592	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10497593	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822397	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822446	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16822454	1.00[AMR][1000 genomes]
rs16822458	1.00[AMR][1000 genomes]
rs16822460	1.00[AMR][1000 genomes]
rs58836112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61711545	1.00[AMR][1000 genomes]
rs6750153	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7578135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7588817	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7608147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv834479	chr2:182738483-182905444	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182843400-182904000	Weak transcription	Thymus	Thymus
2	chr2:182898400-182903200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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