Variant report

Variant	rs10497593
Chromosome Location	chr2:182929507-182929508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10497591	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10497592	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822346	0.83[YRI][hapmap]
rs16822397	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822446	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16822454	0.87[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16822458	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs16822460	0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58836112	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61711545	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6750153	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7569843	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7578135	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7588817	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7608147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182918800-182937400	Weak transcription	Thymus	Thymus
2	chr2:182926800-182929600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:182928400-182929600	Enhancers	Fetal Intestine Large	intestine
4	chr2:182928400-182929600	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr2:182928400-182930600	Enhancers	Fetal Lung	lung
6	chr2:182928400-182930600	Strong transcription	Fetal Thymus	thymus
7	chr2:182928600-182931600	Weak transcription	Liver	Liver
8	chr2:182928800-182929600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:182928800-182929600	Enhancers	Fetal Heart	heart
10	chr2:182929000-182930200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:182929000-182930400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:182929000-182930400	Enhancers	NHLF	lung
13	chr2:182929200-182929600	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:182929200-182930000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr2:182929400-182929600	Enhancers	HUVEC	blood vessel
16	chr2:182929400-182929600	Enhancers	NHDF-Ad	bronchial
17	chr2:182929400-182931800	Weak transcription	Fetal Intestine Small	intestine
18	chr2:182929400-182933000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:182929400-182942600	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links