Variant report

Variant	rs12105843
Chromosome Location	chr2:180334611-180334612
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10209875	1.00[CHB][hapmap]
rs17748998	1.00[CHB][hapmap]
rs2176469	1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2271761	1.00[MEX][hapmap]
rs59353132	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59677078	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033793	1.00[AMR][1000 genomes]
rs73033802	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73037350	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs868271	1.00[CHB][hapmap]
rs990368	0.84[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990370	0.83[LWK][hapmap];1.00[MEX][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332400-180345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:180333400-180335800	Strong transcription	Liver	Liver
6	chr2:180334200-180335600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr2:180334400-180335000	Enhancers	Right Atrium	heart
8	chr2:180334600-180335400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr2:180334600-180335400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:180334600-180335600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:180334600-180335800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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