Variant report

Variant	rs2271761
Chromosome Location	chr2:180311444-180311445
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180311272..180312157-chr2:180511429..180512001,2	MCF-7	breast:
2	chr2:180311253..180312160-chr2:180445474..180446111,2	MCF-7	breast:

rs_ID	r²[population]
rs12105843	1.00[MEX][hapmap]
rs16866730	0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs16866738	0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs2176469	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs34383794	0.89[ASN][1000 genomes]
rs73035320	0.87[AMR][1000 genomes]
rs990368	1.00[MEX][hapmap]
rs990370	0.88[ASW][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180307400-180312800	Enhancers	NHEK	skin
2	chr2:180307800-180320800	Weak transcription	HepG2	liver
3	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180309400-180312200	Weak transcription	Fetal Brain Female	brain
6	chr2:180310200-180312200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:180310200-180312200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr2:180310200-180312400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:180310400-180312200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:180311000-180312600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:180311000-180312600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:180311200-180311800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr2:180311200-180312400	Enhancers	Fetal Intestine Small	intestine
14	chr2:180311200-180312400	Enhancers	HMEC	breast
15	chr2:180311200-180312600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr2:180311200-180312800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr2:180311200-180312800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:180311400-180311800	Weak transcription	Fetal Intestine Large	intestine
19	chr2:180311400-180312400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr2:180311400-180312600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:180311400-180319200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:180311400-180322200	Weak transcription	Liver	Liver

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