Variant report

Variant	rs990370
Chromosome Location	chr2:180320832-180320833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12105843	0.83[LWK][hapmap];1.00[MEX][hapmap]
rs16866730	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16866738	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2271761	0.88[ASW][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs73035320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990368	1.00[MEX][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180308200-180332600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180311400-180322200	Weak transcription	Liver	Liver
4	chr2:180318400-180321000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:180318600-180321000	Enhancers	Osteobl	bone
6	chr2:180318600-180321200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr2:180319200-180321000	Enhancers	HUVEC	blood vessel
8	chr2:180320200-180322400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr2:180320200-180324200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:180320400-180322600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr2:180320800-180321200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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