Variant report

Variant	rs12107691
Chromosome Location	chr3:146778659-146778660
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13086521	1.00[ASN][1000 genomes]
rs16859212	0.83[ASN][1000 genomes]
rs35425454	0.80[AFR][1000 genomes]
rs58234663	1.00[ASN][1000 genomes]
rs58783068	0.92[ASN][1000 genomes]
rs61693575	1.00[ASN][1000 genomes]
rs6763089	0.83[ASN][1000 genomes]
rs6786710	1.00[ASN][1000 genomes]
rs71302447	0.86[EUR][1000 genomes]
rs73866005	0.92[ASN][1000 genomes]
rs73866016	0.92[ASN][1000 genomes]
rs73868550	0.92[ASN][1000 genomes]
rs7651954	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521514	chr3:146647304-146907198	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv591963	chr3:146647304-146907198	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1010901	chr3:146650043-146906503	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1003522	chr3:146671616-146900202	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv536762	chr3:146671616-146900202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1009393	chr3:146726629-146862314	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv460882	chr3:146731231-146907198	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv591964	chr3:146731231-146907198	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1010549	chr3:146751479-146801727	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146777400-146779200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr3:146777600-146779200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:146778000-146779000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:146778600-146779400	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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