Variant report
| Variant | rs16859212 |
|---|---|
| Chromosome Location | chr3:146917780-146917781 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:146913438..146915212-chr3:146916784..146918446,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs11711255 | 0.91[ASN][1000 genomes] |
| rs12107691 | 0.83[ASN][1000 genomes] |
| rs13086521 | 0.83[ASN][1000 genomes] |
| rs16859175 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58234663 | 0.83[ASN][1000 genomes] |
| rs58783068 | 0.91[ASN][1000 genomes] |
| rs61693575 | 0.83[ASN][1000 genomes] |
| rs67169136 | 0.91[ASN][1000 genomes] |
| rs6763089 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6770729 | 1.00[EUR][1000 genomes] |
| rs6778528 | 0.91[ASN][1000 genomes] |
| rs6786710 | 0.83[ASN][1000 genomes] |
| rs72999842 | 0.91[ASN][1000 genomes] |
| rs73866005 | 0.91[ASN][1000 genomes] |
| rs73866016 | 0.91[ASN][1000 genomes] |
| rs73868550 | 0.91[ASN][1000 genomes] |
| rs7649159 | 1.00[EUR][1000 genomes] |
| rs7651954 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs951463 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3385588 | chr3:146782324-147083081 | Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005299 | chr3:146794991-146953727 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv460883 | chr3:146889655-146960105 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv591966 | chr3:146889655-146960105 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv591967 | chr3:146889655-146964828 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146914200-146917800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
