Variant report

Variant	rs58234663
Chromosome Location	chr3:146832173-146832174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12107691	1.00[ASN][1000 genomes]
rs13061188	0.89[EUR][1000 genomes]
rs13074767	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13086521	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16859212	0.83[ASN][1000 genomes]
rs2102158	0.85[AMR][1000 genomes]
rs35728944	0.83[EUR][1000 genomes]
rs58783068	0.92[ASN][1000 genomes]
rs61693575	1.00[ASN][1000 genomes]
rs6763089	0.83[ASN][1000 genomes]
rs6786710	1.00[ASN][1000 genomes]
rs71302436	0.93[AMR][1000 genomes]
rs71302439	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71302440	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs71302441	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71302442	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73866005	0.92[ASN][1000 genomes]
rs73866016	0.92[ASN][1000 genomes]
rs73868550	0.92[ASN][1000 genomes]
rs7651954	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521514	chr3:146647304-146907198	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv591963	chr3:146647304-146907198	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1010901	chr3:146650043-146906503	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1003522	chr3:146671616-146900202	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv536762	chr3:146671616-146900202	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1009393	chr3:146726629-146862314	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv460882	chr3:146731231-146907198	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv591964	chr3:146731231-146907198	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv3385588	chr3:146782324-147083081	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1005299	chr3:146794991-146953727	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv591965	chr3:146797378-146902772	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146830800-146832200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:146830800-146832200	Enhancers	NHDF-Ad	bronchial
3	chr3:146830800-146832600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:146831000-146832200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:146831000-146832200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr3:146831000-146832200	Enhancers	HSMM	muscle
7	chr3:146831000-146832400	Enhancers	Osteobl	bone
8	chr3:146831800-146832200	Enhancers	NH-A	brain
9	chr3:146831800-146837000	Weak transcription	NHLF	lung

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