Variant report

Variant	rs12108138
Chromosome Location	chr3:132964324-132964325
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10428212	0.84[AFR][1000 genomes]
rs12107351	1.00[AFR][1000 genomes]
rs16840072	1.00[AFR][1000 genomes]
rs16840130	0.84[AFR][1000 genomes]
rs16840157	0.84[AFR][1000 genomes]
rs4292227	0.84[AFR][1000 genomes]
rs57407869	0.84[AFR][1000 genomes]
rs58668505	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132957200-132981400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:132958200-132967200	Weak transcription	Fetal Lung	lung
3	chr3:132961200-132967200	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:132962200-132965400	Weak transcription	Lung	lung
5	chr3:132963600-132969200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:132964200-132964400	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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