Variant report

Variant	rs16840072
Chromosome Location	chr3:132943108-132943109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10428212	0.84[AFR][1000 genomes]
rs12107351	1.00[AFR][1000 genomes]
rs12108138	1.00[AFR][1000 genomes]
rs16840130	0.84[AFR][1000 genomes]
rs16840157	0.84[AFR][1000 genomes]
rs4292227	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs57407869	0.84[AFR][1000 genomes]
rs58668505	0.84[AFR][1000 genomes]
rs6792283	1.00[MKK][hapmap];0.85[YRI][hapmap]
rs7613720	0.87[YRI][hapmap]
rs7651300	0.91[MKK][hapmap]
rs9968203	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132939400-132943200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
2	chr3:132941600-132943600	ZNF genes & repeats	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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